1 - Use Charge Flame during jump to destroy the ceiling.
2 - Once the water flooded the room, you can reach the Spirit Light Container.
3 - Open map.
4 - There is hidden path leading to Spirit Light Container, Secret Area #10.
5 - Keystone.
6 - Keystone.
7 - Map Stone Fragment.

Backtrack to your original place.

8 - Open Spirit Gate (requires 2 Keystones).

Between #8 an #9, you'll have to jump on many hanging logs and Bash enemy projectiles to reach the top.

9 - Obtain Stomp Skill from Ancestral Tree Ilo.

Stomp is the one of most powerful attack, it deals huge damage to enemies and reflect all of projectile that shoot at you.

10 - Stomp to break the surface.
11 - Spirit Light Container.

Bash enemy projectile.

12 - Stomp.
13 - Kill Rhino to open the door, now you have Stomp, you can break Rhino's armor using this skill.

14 - Stomp the surface.
15 - Spirit Light Container.
16 - Activate Map Stone.